Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6962

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15329 and 15330 are separated by 49 nucleotides15330 and 15331 are separated by 382 nucleotides mRNA_6961: 15329 - Hypothetical Protein, at 543,904 to 547,836 15329 mRNA_6962: 15330 - K03132 TAF7 transcription initiation factor TFIID subunit 7, at 547,886 to 549,459 15330 mRNA_6963: 15331 - Hypothetical Protein, at 549,842 to 550,144 15331

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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547,218 - 15329 mRNA_6961 0.84 +0.0
547,237 - 15329 mRNA_6961 0.85 -0.0
547,478 + -0.7
547,498 + -1.4
547,613 - +0.9
547,647 + -0.4
547,653 + +0.0
547,662 + +2.4
547,828 + -1.2
548,254 - 15330 mRNA_6962 0.23 -1.6
549,542 + +0.7
549,551 - -0.8
549,555 + +0.2
549,719 + -0.4
549,727 + +0.2
549,885 + 15331 mRNA_6963 0.14 -0.8
550,010 - 15331 mRNA_6963 0.55 +0.2
550,010 + 15331 mRNA_6963 0.55 +0.9
550,286 + +1.7
550,419 - -0.2
550,443 - +0.3
550,448 - +1.3

Or see this region's nucleotide sequence