Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7120

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15487 and 15488 are separated by 196 nucleotides15488 and 15489 are separated by 394 nucleotides mRNA_7119: 15487 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 925,180 to 925,476 15487 mRNA_7120: 15488 - K01649 leuA 2-isopropylmalate synthase, at 925,673 to 928,023 15488 mRNA_7121: 15489 - PRINTS-Proline rich extensin signature-PR01217,ProSiteProfiles-EH domain profile.-PS50031, at 928,418 to 929,954 15489

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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924,886 - +0.2
925,079 - +0.8
925,100 + -0.3
925,217 + 15487 mRNA_7119 0.12 -0.4
925,220 - 15487 mRNA_7119 0.13 -0.2
925,279 + 15487 mRNA_7119 0.33 -0.2
925,402 + 15487 mRNA_7119 0.75 +0.1
928,041 - -0.9
928,064 + -0.8
928,173 - -0.3
928,174 - +0.9
928,183 - -0.7
928,194 - +1.7
928,360 - +1.9
928,401 - +0.5
928,540 + +0.6
928,545 - -0.4

Or see this region's nucleotide sequence