Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7157

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15524 and 15525 are separated by 867 nucleotides15525 and 15526 are separated by 180 nucleotides mRNA_7156: 15524 - K20102 YTHDF YTH domain-containing family protein, at 1,010,794 to 1,011,457 15524 mRNA_7157: 15525 - KOG2936 Uncharacterized conserved protein, at 1,012,325 to 1,013,982 15525 mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1,014,163 to 1,016,901 15526

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,011,351 - 15524 mRNA_7156 0.84 +0.5
1,011,422 + +0.3
1,011,424 - -0.6
1,011,520 - -0.7
1,011,552 + +0.1
1,011,561 - +0.8
1,011,640 - +0.6
1,011,654 - +1.9
1,011,687 - -0.0
1,011,725 + +0.2
1,011,812 + -0.4
1,012,084 + +1.6
1,012,090 + +0.6
1,012,257 + -1.3
1,012,261 - -0.5
1,012,434 + -1.3
1,012,525 - 15525 mRNA_7157 0.12 -0.8
1,012,534 + 15525 mRNA_7157 0.13 -0.5
1,012,708 - 15525 mRNA_7157 0.23 -0.0
1,012,778 + 15525 mRNA_7157 0.27 -0.2
1,012,828 + 15525 mRNA_7157 0.30 -1.7
1,012,842 - 15525 mRNA_7157 0.31 -0.5
1,012,863 + 15525 mRNA_7157 0.32 -1.1
1,013,396 - 15525 mRNA_7157 0.65 -0.4
1,013,404 - 15525 mRNA_7157 0.65 -0.2
1,013,427 - 15525 mRNA_7157 0.66 -1.8
1,014,649 - 15526 mRNA_7158 0.18 +0.6
1,014,921 + 15526 mRNA_7158 0.28 -0.0

Or see this region's nucleotide sequence