Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7261

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15629 and 15630 are separated by 647 nucleotides mRNA_7261: 15629 - SUPERFAMILY--SSF51735, at 1,246,601 to 1,248,053 15629 mRNA_7262: 15630 - HMMPfam-Peptidase M50B-like-PF13398, at 1,248,701 to 1,250,915 15630

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,245,796 - +1.7
1,245,909 - +1.7
1,245,909 - +0.3
1,245,928 + +0.4
1,246,064 - +0.2
1,246,236 + +0.2
1,246,242 + -1.1
1,246,250 + +0.2
1,246,509 + +0.8
1,246,552 - +0.5
1,246,638 + +0.8
1,246,666 + +0.3
1,246,682 + +0.7
1,246,746 - -0.1
1,246,788 - 15629 mRNA_7261 0.13 +0.3
1,246,923 + 15629 mRNA_7261 0.22 -0.6
1,246,945 + 15629 mRNA_7261 0.24 +1.5
1,246,980 - 15629 mRNA_7261 0.26 +0.3
1,246,986 + 15629 mRNA_7261 0.26 -0.5
1,246,989 - 15629 mRNA_7261 0.27 -0.6
1,247,331 - 15629 mRNA_7261 0.50 -2.1
1,247,544 - 15629 mRNA_7261 0.65 -0.2
1,247,680 + 15629 mRNA_7261 0.74 -0.2
1,247,681 + 15629 mRNA_7261 0.74 +2.0
1,247,682 - 15629 mRNA_7261 0.74 -3.0
1,247,803 - 15629 mRNA_7261 0.83 -0.1
1,247,848 + 15629 mRNA_7261 0.86 -0.7
1,248,100 - -0.5
1,248,105 - +0.3
1,248,111 + +0.6
1,248,120 + +0.8
1,248,121 + +0.6
1,248,122 - +0.0
1,248,123 + +0.2
1,248,128 - -1.1
1,248,130 - +1.0
1,248,130 + +0.6
1,248,130 + +0.1
1,248,139 - -0.4
1,248,150 + -0.1
1,248,152 + +0.5
1,248,152 + -0.1
1,248,161 + -1.0
1,248,418 + -0.1
1,248,421 + -0.2
1,248,438 + +0.3
1,248,439 - +0.1
1,248,454 - +2.7
1,248,720 - -0.3
1,248,720 - +0.0
1,248,851 + +0.7
1,248,921 - +1.9
1,249,027 + 15630 mRNA_7262 0.15 -0.2

Or see this region's nucleotide sequence