Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7274

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15641 and 15642 are separated by 249 nucleotides15642 and 15643 are separated by 671 nucleotides mRNA_7273: 15641 - K15859 SKN7 osomolarity two-component system, response regulator SKN7, at 1,272,818 to 1,275,702 15641 mRNA_7274: 15642 - Hypothetical Protein, at 1,275,952 to 1,277,293 15642 mRNA_7275: 15643 - HMMPfam-Uncharacterized conserved protein (DUF2346)-PF09803, at 1,277,965 to 1,278,426 15643

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,274,957 + 15641 mRNA_7273 0.74 +0.2
1,274,957 - 15641 mRNA_7273 0.74 +1.3
1,275,494 - +0.4
1,275,531 + -0.4
1,275,553 - -0.2
1,275,700 - -0.0
1,275,796 + -0.2
1,275,817 - +0.3
1,275,829 + +1.0
1,275,954 + +1.5
1,275,978 - +1.8
1,275,979 - +0.0
1,276,002 + +1.0
1,276,009 + -0.5
1,277,727 + -0.4

Or see this region's nucleotide sequence