Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7317

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15684 and 15685 are separated by 454 nucleotides15685 and 15686 are separated by 335 nucleotides mRNA_7316: 15684 - KOG4178 Soluble epoxide hydrolase, at 1,380,551 to 1,382,072 15684 mRNA_7317: 15685 - K01652 E2.2.1.6L, ilvB, ilvG, ilvI acetolactate synthase I/II/III large subunit, at 1,382,527 to 1,385,139 15685 mRNA_7318: 15686 - KOG4018 Uncharacterized conserved protein, contains RWD domain, at 1,385,475 to 1,386,748 15686

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,381,885 + 15684 mRNA_7316 0.88 -1.5
1,381,887 - 15684 mRNA_7316 0.88 -0.9
1,381,902 - 15684 mRNA_7316 0.89 -1.1
1,381,924 + -1.2
1,381,928 + -1.4
1,381,936 + -0.0
1,382,070 + +0.4
1,382,081 - +0.6
1,382,089 + -0.6
1,382,130 - +0.9
1,382,243 - -0.3
1,382,244 + -0.6
1,382,246 - -1.5
1,382,246 + +0.2
1,382,263 + +0.6
1,382,278 + +1.9
1,385,192 - +2.3
1,385,214 - +0.5
1,385,218 - +1.4
1,385,229 - +0.5
1,385,655 - 15686 mRNA_7318 0.14 +1.0
1,385,661 - 15686 mRNA_7318 0.15 -0.7
1,385,975 + 15686 mRNA_7318 0.39 +0.1
1,385,978 + 15686 mRNA_7318 0.39 -0.6
1,386,111 + 15686 mRNA_7318 0.50 +2.9
1,386,133 - 15686 mRNA_7318 0.52 +2.4

Or see this region's nucleotide sequence