Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7318

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15685 and 15686 are separated by 335 nucleotides mRNA_7317: 15685 - K01652 E2.2.1.6L, ilvB, ilvG, ilvI acetolactate synthase I/II/III large subunit, at 1,382,527 to 1,385,139 15685 mRNA_7318: 15686 - KOG4018 Uncharacterized conserved protein, contains RWD domain, at 1,385,475 to 1,386,748 15686

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,385,192 - +2.3
1,385,214 - +0.5
1,385,218 - +1.4
1,385,229 - +0.5
1,385,655 - 15686 mRNA_7318 0.14 +1.0
1,385,661 - 15686 mRNA_7318 0.15 -0.7
1,385,975 + 15686 mRNA_7318 0.39 +0.1
1,385,978 + 15686 mRNA_7318 0.39 -0.6
1,386,111 + 15686 mRNA_7318 0.50 +2.9
1,386,133 - 15686 mRNA_7318 0.52 +2.4
1,386,231 + 15686 mRNA_7318 0.59 +0.6
1,386,261 - 15686 mRNA_7318 0.62 -0.3
1,386,267 - 15686 mRNA_7318 0.62 +0.8
1,386,537 + 15686 mRNA_7318 0.83 +1.1
1,386,549 + 15686 mRNA_7318 0.84 +0.1
1,386,556 - 15686 mRNA_7318 0.85 +1.5
1,386,663 - +0.2
1,386,675 - +0.5
1,386,683 - -0.3
1,386,691 - +0.1
1,386,693 + +0.4
1,386,743 + -0.9
1,386,805 - +0.6
1,386,808 - +1.0
1,386,842 + +1.3
1,386,844 - +0.7
1,386,895 + -0.1
1,386,973 - +1.0
1,387,046 - -1.5
1,387,097 - +1.5
1,387,118 + -0.9
1,387,126 - +0.2
1,387,158 - -0.2
1,387,160 - +0.8
1,387,232 - +0.8
1,387,245 - +1.1
1,387,301 - +0.2
1,387,308 + -1.3
1,387,319 - +1.1
1,387,507 + -0.4
1,387,598 + +0.8
1,387,599 + +1.0
1,387,648 + +2.0
1,387,732 + +0.7

Or see this region's nucleotide sequence