Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7322

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15689 and 15690 are separated by 658 nucleotides15690 and 15691 are separated by 706 nucleotides mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689 mRNA_7322: 15690 - K14849 RRP1 ribosomal RNA-processing protein 1, at 4,422 to 5,823 15690 mRNA_7323: 15691 - K10579 UBE2M, UBC12 ubiquitin-conjugating enzyme E2 M, at 6,530 to 7,758 15691

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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3,458 + 15689 mRNA_7321 0.83 -0.6
3,461 + 15689 mRNA_7321 0.83 -1.0
3,499 + 15689 mRNA_7321 0.85 -0.8
3,517 + 15689 mRNA_7321 0.86 -0.1
3,520 + 15689 mRNA_7321 0.87 +0.7
3,523 + 15689 mRNA_7321 0.87 -0.7
3,564 + 15689 mRNA_7321 0.89 +0.9
3,645 - +0.0
3,732 + +3.5
3,815 + -1.6
3,862 - -1.7
3,864 - -0.1
3,919 - +1.6
3,939 + +0.1
3,945 - -0.1
3,951 + -3.3
3,964 + +0.8
3,971 + +1.0
3,971 + +0.2
3,971 - -0.1
3,979 - -0.0
3,985 - -0.2
3,986 + -0.5
4,018 - -0.1
4,041 - -1.4
4,042 + -0.0
4,046 - +0.1
4,055 - +1.8
4,058 + +1.2
4,059 + +0.2
4,061 - -0.9
4,072 + +0.1
4,080 - +0.3
4,092 - +0.6
4,117 + -2.1
4,138 - +0.2
4,151 + +0.2
4,156 + +1.5
4,178 + -1.9
4,316 + +2.1
4,320 + -0.4
4,339 + +1.7
4,343 - -1.5
5,915 - -1.1
5,917 + +1.5
5,917 + +0.3
5,924 + -0.2
5,931 + +1.5
6,078 - +0.1
6,084 + +0.0
6,084 + -2.0
6,228 - -1.7
6,323 + +1.4
6,324 - -0.1
6,382 + -1.1
6,387 + +0.0

Or see this region's nucleotide sequence