Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7385

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15752 and 15753 are separated by 289 nucleotides15753 and 15754 are separated by 159 nucleotides mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152,913 to 154,132 15752 mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154,422 to 157,963 15753 mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158,123 to 159,294 15754

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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154,178 + +0.2
154,210 - +0.3
154,217 + +0.5
154,239 + +0.4
154,256 + +0.1
154,344 - -0.4
154,352 + +0.3
154,353 - +0.4
154,358 - +1.6
154,361 + +0.6
154,364 - -1.2
154,371 - +0.9
154,375 + +2.9
154,379 - -0.5
154,382 + -0.5
154,383 + -1.1
154,404 + -0.1
154,411 - +1.5
154,528 - +0.2
154,668 + -0.2
154,814 - 15753 mRNA_7385 0.11 +1.3
154,853 - 15753 mRNA_7385 0.12 +0.1
155,279 - 15753 mRNA_7385 0.24 -0.4
155,419 + 15753 mRNA_7385 0.28 +1.5
156,040 + 15753 mRNA_7385 0.46 -0.7
156,182 - 15753 mRNA_7385 0.50 +0.9
156,367 - 15753 mRNA_7385 0.55 +1.3
156,566 + 15753 mRNA_7385 0.61 +0.9
157,008 - 15753 mRNA_7385 0.73 +0.4
157,199 + 15753 mRNA_7385 0.78 +0.2
157,295 - 15753 mRNA_7385 0.81 -0.6
157,296 + 15753 mRNA_7385 0.81 -0.2
157,487 + 15753 mRNA_7385 0.87 +0.8
157,652 + -1.0
157,742 - +1.1
157,862 - +1.1
158,223 - +1.8
158,329 + 15754 mRNA_7386 0.18 +0.9
158,333 - 15754 mRNA_7386 0.18 +0.2
158,399 - 15754 mRNA_7386 0.24 +0.8
158,492 + 15754 mRNA_7386 0.31 +0.6
158,496 - 15754 mRNA_7386 0.32 +1.3
158,508 + 15754 mRNA_7386 0.33 -0.0

Or see this region's nucleotide sequence