Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7512

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15879 and 15880 are separated by 464 nucleotides15880 and 15881 are separated by 265 nucleotides mRNA_7511: 15879 - K01507 ppa inorganic pyrophosphatase, at 466,994 to 468,563 15879 mRNA_7512: 15880 - HMMPfam-ATP synthase E chain-PF05680, at 469,028 to 469,780 15880 mRNA_7513: 15881 - KOG3267 Uncharacterized conserved protein, at 470,046 to 470,823 15881

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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468,590 + +0.6
468,662 - -0.8
468,675 + -0.4
468,851 + +0.1
469,695 + 15880 mRNA_7512 0.89 +2.5
469,712 + +1.0
469,828 - +0.4
469,852 + -1.1
469,868 + +1.2
470,114 + +1.0
470,142 + 15881 mRNA_7513 0.12 +0.7
470,150 - 15881 mRNA_7513 0.13 +2.0
470,170 - 15881 mRNA_7513 0.16 -0.1
470,319 + 15881 mRNA_7513 0.35 +0.9
470,457 + 15881 mRNA_7513 0.53 +0.4
470,717 - 15881 mRNA_7513 0.86 +0.8

Or see this region's nucleotide sequence