Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7522

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15890 and 15891 are separated by 366 nucleotides mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490,428 to 491,714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296 15891

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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489,444 - +0.1
489,447 + +0.3
489,478 - +1.2
489,527 + +0.5
489,532 + +0.6
489,547 - -0.0
489,570 + -0.5
489,570 + -1.7
489,590 - +0.0
489,602 + -0.6
489,615 - +0.1
489,615 - +0.9
489,617 + +0.1
489,618 + +1.4
489,619 + +2.7
489,622 - -0.1
489,625 - +0.6
489,626 - +1.2
489,630 - +0.3
489,631 - +1.2
489,640 - +0.6
489,641 + +0.2
489,642 + +0.4
489,646 + -0.3
489,647 + -1.1
489,653 - +1.3
489,653 - +0.0
489,654 + +0.6
489,660 + +0.3
489,663 + +0.1
489,664 + +1.0
489,664 + +1.1
489,665 - +0.6
489,665 - +1.1
489,666 - -0.3
489,668 - +1.2
489,670 - -0.3
489,673 + -0.7
489,684 + -0.4
489,686 + +1.0
489,805 + +1.9
489,805 - +0.1
489,807 - +0.2
489,808 + +1.0
489,825 - +0.6
489,833 - +1.6
489,836 - +0.1
489,847 - -0.4
489,851 + +0.9
489,936 - +0.1
489,965 - +1.2
489,975 - +2.3
489,985 - +1.3
489,985 + +1.2
489,992 + -1.0
490,001 + +0.5
490,038 + +0.5
490,086 - -0.1
490,104 + +1.8
490,104 + -0.0
490,107 - +1.2
490,113 + +0.9
490,117 - +0.1
490,124 + +0.9
490,128 + +1.0
490,132 + +0.8
490,132 - +0.9
490,140 + +0.9
490,145 - +0.3
490,146 + -0.2
490,152 - +0.7
490,169 + +1.0
490,172 + +0.4
490,180 - +0.4
490,190 - +0.9
490,193 + +0.6
490,207 + -0.7
490,419 - +0.6
490,476 + +0.8
490,503 - +1.6
490,622 - 15890 mRNA_7522 0.15 +0.3
490,740 - 15890 mRNA_7522 0.24 +2.3
490,750 + 15890 mRNA_7522 0.25 +0.4
490,751 - 15890 mRNA_7522 0.25 +1.2
490,771 - 15890 mRNA_7522 0.27 +1.7
490,778 + 15890 mRNA_7522 0.27 +0.6
491,085 - 15890 mRNA_7522 0.51 +3.0
491,425 - 15890 mRNA_7522 0.77 -0.2
491,543 - 15890 mRNA_7522 0.87 +0.5
491,573 + 15890 mRNA_7522 0.89 -0.2
491,646 - +1.4
491,647 + +0.6
491,760 - -1.1
491,849 - -0.6
491,986 + +0.3
492,005 - -0.9
492,044 + +0.2
492,053 + +0.0
492,063 + +0.3
492,303 - 15891 mRNA_7523 0.18 +0.4
492,418 + 15891 mRNA_7523 0.28 -0.2
492,452 - 15891 mRNA_7523 0.31 +0.7

Or see this region's nucleotide sequence