Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7560

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15927 and 15928 are separated by 408 nucleotides15928 and 15929 are separated by 702 nucleotides mRNA_7559: 15927 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 563,948 to 564,897 15927 mRNA_7560: 15928 - K12346 SMF metal iron transporter, at 565,306 to 568,103 15928 mRNA_7561: 15929 - KOG2290 Rhomboid family proteins, at 568,806 to 571,438 15929

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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564,333 + 15927 mRNA_7559 0.41 -0.4
564,484 + 15927 mRNA_7559 0.56 +0.3
564,636 - 15927 mRNA_7559 0.72 -1.2
564,667 + 15927 mRNA_7559 0.76 -0.5
564,802 + 15927 mRNA_7559 0.90 +0.1
564,919 + +1.0
565,075 - +0.5
565,082 + +2.6
565,083 - +2.8

Or see this region's nucleotide sequence