Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7649

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16016 and 16017 are separated by 412 nucleotides16017 and 16018 are separated by 169 nucleotides mRNA_7648: 16016 - K01705 LYS4 homoaconitate hydratase, at 761,221 to 763,593 16016 mRNA_7649: 16017 - K13346 PEX10 peroxin-10, at 764,006 to 765,401 16017 mRNA_7650: 16018 - K08008 NOX, GP91 NADPH oxidase, at 765,571 to 768,508 16018

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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763,468 - +0.4
763,597 - -2.1
763,603 - +0.4
763,613 - -0.3
763,616 + -1.7
763,619 - -0.4
763,724 - -0.1
763,741 - +0.9
763,741 - -0.4
764,064 - -0.7
765,953 + 16018 mRNA_7650 0.13 -0.4
766,075 - 16018 mRNA_7650 0.17 +0.1
766,095 - 16018 mRNA_7650 0.18 +0.7
766,177 + 16018 mRNA_7650 0.21 +0.9

Or see this region's nucleotide sequence