Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7708

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16075 and 16076 are separated by 343 nucleotides16076 and 16077 are separated by 689 nucleotides mRNA_7707: 16075 - HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098, at 895,894 to 899,712 16075 mRNA_7708: 16076 - Hypothetical Protein, at 900,056 to 901,517 16076 mRNA_7709: 16077 - K19877 CHS5 chitin biosynthesis protein CHS5, at 902,207 to 904,253 16077

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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899,295 - 16075 mRNA_7707 0.89 +0.0
899,357 - -1.7
899,381 + +0.4
899,460 - -0.2
899,612 - -0.8
899,804 + +0.2
899,867 + -2.1
899,889 - -0.0
900,081 - +0.1
900,103 + +0.6
900,929 + 16076 mRNA_7708 0.60 +0.2
901,046 + 16076 mRNA_7708 0.68 +0.6
901,126 + 16076 mRNA_7708 0.73 +0.3
901,471 + -0.6
901,486 + +0.2
901,504 + +1.7
901,505 + -0.3
901,509 + -1.1
901,509 + +0.2
901,522 - +0.4
901,524 + -0.1
901,544 - -0.0
901,547 + -0.9
901,607 + +1.4
901,617 - +0.2
901,635 - +1.0
901,668 - -0.6
901,669 - -2.1
901,677 - +0.3
901,680 - -0.7
901,683 + +0.6
901,694 + +2.2
901,695 - +0.3
901,695 + +1.0
901,696 - -0.3
901,697 - +0.4
901,699 - +0.9
901,705 - +0.7
901,735 - +0.6
901,736 + +1.0
901,737 - -0.2
901,738 + +1.0
901,738 + -0.5
901,738 + +2.4
901,739 + -0.2
901,743 - +1.5
901,749 - +0.7
901,750 - +0.2
901,757 + -0.1
901,776 - +0.3
901,778 + -0.0
901,781 - -0.3
901,782 + +0.1
901,787 - -0.4
901,787 + +0.2
901,800 + +0.8
901,802 - +0.3
901,803 + +2.1
901,813 + +1.6
901,815 + +0.1
901,820 - -1.4
901,828 - +2.5
901,854 - -0.1
901,860 - +0.4
901,862 - -1.1
901,866 - +0.1
901,888 + +1.1
901,925 - +0.4
901,946 - +0.9
901,959 - +0.7
901,962 + -1.0
901,962 - -0.4
901,964 + +0.9
901,965 - +0.5
901,971 + +0.3
901,977 + +1.2
901,991 + -0.7
901,992 - +0.2
902,011 + +0.7
902,100 - +1.0
902,102 - +2.0
902,104 + -0.8
902,156 + +0.3
902,254 - +0.5
902,398 + +0.0

Or see this region's nucleotide sequence