Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7722

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16089 and 16090 are separated by 240 nucleotides16090 and 16091 are separated by 393 nucleotides mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925,518 to 928,664 16089 mRNA_7722: 16090 - BLAST iQ calmodulin-binding motif protein [Moesziomyces..., at 928,905 to 930,722 16090 mRNA_7723: 16091 - HMMPfam-Domain of unknown function (DUF427)-PF04248, at 931,116 to 931,814 16091

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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928,675 + -0.6
928,721 + -1.2
928,772 - +1.4
928,777 + -1.4
928,782 + -0.5
928,804 - +0.7
928,808 + -0.4
928,809 - +0.8
928,850 + +2.0
928,851 + +1.5
928,853 - +0.1
928,976 - +0.5
929,012 - +0.5
929,148 + 16090 mRNA_7722 0.13 +0.6
929,284 - 16090 mRNA_7722 0.21 -0.5
929,560 - 16090 mRNA_7722 0.36 +1.6
929,577 - 16090 mRNA_7722 0.37 +0.2
930,052 - 16090 mRNA_7722 0.63 +0.3
930,117 + 16090 mRNA_7722 0.67 +0.7
930,149 + 16090 mRNA_7722 0.68 +0.4
930,294 + 16090 mRNA_7722 0.76 +1.0
930,581 - -0.2
930,582 + -0.3
930,680 - +0.2
930,733 - +0.3
930,754 - +0.2
930,758 - +0.1
931,028 - -0.7
931,032 + +0.2
931,144 - -0.4
931,282 + 16091 mRNA_7723 0.24 -1.0
931,309 - 16091 mRNA_7723 0.28 +1.1
931,314 + 16091 mRNA_7723 0.28 +0.7
931,640 - 16091 mRNA_7723 0.75 -1.1

Or see this region's nucleotide sequence