Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7738

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16105 and 16106 are separated by 148 nucleotides16106 and 16107 are separated by 276 nucleotides mRNA_7737: 16105 - HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909, at 959,514 to 960,315 16105 mRNA_7738: 16106 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 960,464 to 961,733 16106 mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962,010 to 966,625 16107

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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959,472 - +0.5
959,646 - 16105 mRNA_7737 0.16 -0.2
959,726 - 16105 mRNA_7737 0.26 -1.0
959,874 + 16105 mRNA_7737 0.45 +0.1
961,150 + 16106 mRNA_7738 0.54 +2.0
961,157 - 16106 mRNA_7738 0.55 +0.1
961,215 + 16106 mRNA_7738 0.59 +0.5
961,584 + 16106 mRNA_7738 0.88 -0.3
961,649 - +0.7
961,655 + +1.0
961,658 - +0.5
961,912 + +0.3
962,030 - -0.0
962,620 - 16107 mRNA_7739 0.13 -1.1

Or see this region's nucleotide sequence