Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7788

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16155 and 16156 are separated by 390 nucleotides16156 and 16157 are separated by 514 nucleotides mRNA_7787: 16155 - Hypothetical Protein, at 1,067,923 to 1,069,410 16155 mRNA_7788: 16156 - Hypothetical Protein, at 1,069,801 to 1,071,312 16156 mRNA_7789: 16157 - Hypothetical Protein, at 1,071,827 to 1,073,399 16157

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,069,094 - 16155 mRNA_7787 0.79 +0.5
1,069,145 - 16155 mRNA_7787 0.82 -0.6
1,069,434 + +0.1
1,069,568 + +0.8
1,069,611 + -0.2
1,069,698 - -0.8
1,069,712 - +0.9
1,069,856 - +0.1
1,069,872 + +0.0
1,069,874 - +0.1
1,069,874 - -1.5
1,069,876 - -0.1
1,069,962 + 16156 mRNA_7788 0.11 +0.4
1,070,013 + 16156 mRNA_7788 0.14 -0.3
1,070,195 + 16156 mRNA_7788 0.26 -0.9
1,070,195 + 16156 mRNA_7788 0.26 +0.3
1,070,285 + 16156 mRNA_7788 0.32 -0.8
1,070,285 + 16156 mRNA_7788 0.32 -1.0
1,070,318 + 16156 mRNA_7788 0.34 -0.1
1,070,429 - 16156 mRNA_7788 0.42 -0.3
1,070,584 - 16156 mRNA_7788 0.52 +0.3
1,070,862 - 16156 mRNA_7788 0.70 -0.9
1,070,989 - 16156 mRNA_7788 0.79 -0.7
1,071,053 + 16156 mRNA_7788 0.83 -0.7
1,071,163 - +1.1
1,071,313 - +0.5
1,071,327 + +0.6
1,071,328 - +2.3
1,071,332 + +0.3
1,071,338 + +0.1
1,071,461 - +0.1
1,071,483 + -1.0
1,071,599 - +1.7
1,071,620 - +0.6
1,071,624 - +0.6
1,071,732 - -1.3
1,071,746 + -0.8
1,071,764 - -0.6
1,071,789 - +1.6
1,071,803 - +0.2
1,071,807 - +0.1
1,071,858 + +2.5
1,071,874 - +0.3
1,071,912 - -0.2
1,071,920 - +2.8
1,072,183 + 16157 mRNA_7789 0.23 -0.4
1,072,259 - 16157 mRNA_7789 0.27 +1.4

Or see this region's nucleotide sequence