Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7820

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16187 and 16188 are separated by 250 nucleotides16188 and 16189 are separated by 389 nucleotides mRNA_7819: 16187 - K15015 SLC32A, VGAT solute carrier family 32 (vesicular inhibitory amino acid transporter), at 1,142,212 to 1,144,699 16187 mRNA_7820: 16188 - Hypothetical Protein, at 1,144,950 to 1,145,793 16188 mRNA_7821: 16189 - Hypothetical Protein, at 1,146,183 to 1,147,264 16189

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,144,338 + 16187 mRNA_7819 0.85 -0.0
1,144,770 + +0.9
1,144,814 - -0.0
1,145,126 + 16188 mRNA_7820 0.21 +0.9
1,145,249 + 16188 mRNA_7820 0.35 +0.6
1,145,260 - 16188 mRNA_7820 0.37 -0.2
1,145,390 + 16188 mRNA_7820 0.52 +1.1
1,145,399 - 16188 mRNA_7820 0.53 -0.1
1,145,822 - +0.4
1,145,832 + +1.4
1,145,847 - +1.5
1,145,981 + +2.0
1,145,982 - +0.3
1,146,029 - +1.9
1,146,239 + -0.5
1,146,282 + +0.9
1,146,417 + 16189 mRNA_7821 0.22 -0.2
1,146,486 - 16189 mRNA_7821 0.28 +0.1
1,146,546 - 16189 mRNA_7821 0.34 +0.1
1,146,570 - 16189 mRNA_7821 0.36 +0.5

Or see this region's nucleotide sequence