Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7843

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16210 and 16211 are separated by 258 nucleotides16211 and 16212 are separated by 342 nucleotides mRNA_7842: 16210 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SMART-ankyrin repeats-SM00248,SUPERFAMILY--SSF48403, at 1,195,063 to 1,195,629 16210 mRNA_7843: 16211 - BLAST alpha- -glucan [Moniliophthora roreri MCA 2997], at 1,195,888 to 1,196,592 16211 mRNA_7844: 16212 - K02966 RP-S19e, RPS19 small subunit ribosomal protein S19e, at 1,196,935 to 1,198,284 16212

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,194,953 + +1.4
1,195,300 + 16210 mRNA_7842 0.42 +0.7
1,195,419 + 16210 mRNA_7842 0.63 -0.8
1,195,432 - 16210 mRNA_7842 0.65 +1.1
1,195,436 + 16210 mRNA_7842 0.66 +0.4
1,195,583 + +0.1
1,195,617 + +2.4
1,195,731 - -0.1
1,195,739 + -0.9
1,195,747 + +0.6
1,195,863 - -0.9
1,195,871 - +0.1
1,195,873 - +0.4
1,196,691 + +0.4
1,196,774 - -0.4
1,196,774 - +2.4

Or see this region's nucleotide sequence