Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7856

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16223 and 16224 are separated by 94 nucleotides16224 and 16225 are separated by 699 nucleotides mRNA_7855: 16223 - K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82, at 1,228,855 to 1,230,795 16223 mRNA_7856: 16224 - K17783 ERV1, GFER, ALR mitochondrial FAD-linked sulfhydryl oxidase, at 1,230,890 to 1,231,576 16224 mRNA_7857: 16225 - K00211 TYR1 prephenate dehydrogenase (NADP+), at 1,232,276 to 1,233,897 16225

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,230,435 - 16223 mRNA_7855 0.81 -0.5
1,230,716 - +0.8
1,230,753 + -0.7
1,230,889 + -2.3
1,231,583 + +0.2
1,231,591 - +0.6
1,231,621 - -0.0
1,231,635 + +0.5
1,231,640 - +0.7
1,231,647 + -0.0
1,231,650 + -0.8
1,231,790 - -1.0
1,231,802 + +0.2
1,231,843 + +0.4
1,231,927 + +0.4
1,231,941 - +0.3
1,231,950 + -0.5
1,232,063 - -0.8
1,232,242 + +0.4

Or see this region's nucleotide sequence