Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7875

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16242 and 16243 are separated by 438 nucleotides16243 and 16244 are separated by 123 nucleotides mRNA_7874: 16242 - K02202 CDK7 cyclin-dependent kinase 7, at 1,274,246 to 1,275,705 16242 mRNA_7875: 16243 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,276,144 to 1,278,283 16243 mRNA_7876: 16244 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1,278,407 to 1,280,463 16244

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,275,549 - 16242 mRNA_7874 0.89 -0.2
1,275,796 - +0.0
1,275,839 + -0.2
1,275,887 + +0.5
1,275,888 + +1.4
1,275,903 - +1.2
1,275,926 + +1.2
1,275,934 + -0.2
1,275,941 + -0.1
1,275,944 - +0.5
1,275,949 + -0.4
1,275,952 - -0.2
1,275,952 - +0.4
1,275,967 + +0.5
1,275,975 + +0.7
1,275,977 - +0.9
1,276,030 - -0.5
1,276,042 + +1.0
1,276,043 + +1.0
1,276,053 - +1.1
1,276,066 + +1.6
1,276,073 - +1.4
1,276,076 - +0.3
1,276,078 - +0.1
1,276,083 + +1.7
1,276,088 - -1.2
1,276,106 - +1.3
1,276,109 + -0.2
1,276,119 + +0.3
1,276,137 - -0.0
1,276,242 - -0.0
1,276,249 + -1.7
1,276,281 - +0.5
1,276,363 + 16243 mRNA_7875 0.10 +0.2
1,276,382 + 16243 mRNA_7875 0.11 +0.4
1,276,528 - 16243 mRNA_7875 0.18 -0.0
1,276,587 + 16243 mRNA_7875 0.21 -1.3
1,276,729 + 16243 mRNA_7875 0.27 +0.3
1,276,959 + 16243 mRNA_7875 0.38 +0.3
1,277,110 - 16243 mRNA_7875 0.45 -1.6
1,277,126 - 16243 mRNA_7875 0.46 +0.6
1,277,146 + 16243 mRNA_7875 0.47 -0.8
1,277,437 - 16243 mRNA_7875 0.60 +0.9
1,277,593 - 16243 mRNA_7875 0.68 +3.3
1,277,626 + 16243 mRNA_7875 0.69 -0.1
1,277,720 - 16243 mRNA_7875 0.74 -0.6
1,277,831 - 16243 mRNA_7875 0.79 +0.6
1,277,860 - 16243 mRNA_7875 0.80 -0.5
1,277,863 - 16243 mRNA_7875 0.80 -0.4
1,277,870 + 16243 mRNA_7875 0.81 -0.6
1,278,047 + 16243 mRNA_7875 0.89 +0.5
1,278,292 - +1.6
1,278,403 + +0.6
1,278,482 - +0.9
1,278,491 + -0.3
1,278,779 + 16244 mRNA_7876 0.18 +1.6
1,279,010 - 16244 mRNA_7876 0.29 +1.0

Or see this region's nucleotide sequence