Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7918

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16285 and 16286 are separated by 194 nucleotides mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077 16285 mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18,272 to 19,315 16286

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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17,331 + 16285 mRNA_7917 0.57 +0.5
17,480 - 16285 mRNA_7917 0.65 -0.2
17,684 - 16285 mRNA_7917 0.77 -0.1
17,789 - 16285 mRNA_7917 0.83 +0.4
17,900 + 16285 mRNA_7917 0.90 +0.5
18,055 + +1.6
18,058 - +0.7
18,219 + +1.0
18,322 - +0.5
18,351 - +0.5
18,358 - +0.1
18,417 - 16286 mRNA_7918 0.14 +0.1
18,480 - 16286 mRNA_7918 0.20 +1.4
18,788 - 16286 mRNA_7918 0.49 -1.4
18,791 - 16286 mRNA_7918 0.50 +0.6
18,915 + 16286 mRNA_7918 0.62 -0.7
18,916 - 16286 mRNA_7918 0.62 +0.1
19,036 + 16286 mRNA_7918 0.73 +0.0
19,095 + 16286 mRNA_7918 0.79 -0.4
19,100 - 16286 mRNA_7918 0.79 +0.2
19,378 - -0.6
19,588 + -0.3
19,654 - +0.7
19,764 - +1.9
19,817 - +0.0
19,831 - -1.7
19,837 + -0.1
19,914 + +0.2
19,934 - -0.7
19,935 + +1.1
20,235 + -0.1
20,291 - -0.5

Or see this region's nucleotide sequence