Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8026

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16393 and 16394 are separated by 311 nucleotides16394 and 16395 are separated by 264 nucleotides mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235,031 to 239,261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239,573 to 243,561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243,826 to 244,717 16395

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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238,894 - +1.2
238,928 - +0.8
239,064 + -0.7
239,345 + +0.1
239,352 + +0.2
239,353 + +0.6
239,357 + +3.0
239,374 + -0.8
239,484 + -1.5
239,490 - -0.3
239,490 - +0.4
239,496 - +0.3
239,507 - -0.1
239,511 - +0.1
239,525 + +0.7
239,534 + +2.5
239,631 - -0.5
239,678 + +0.2
239,698 + -0.7
239,837 + -1.3
239,842 + +2.4
239,843 + +0.1
239,848 - +0.1
239,849 + -0.4
239,866 - -0.4
239,979 + 16394 mRNA_8026 0.10 +2.5
240,060 + 16394 mRNA_8026 0.12 +0.2
240,092 + 16394 mRNA_8026 0.13 +1.0
240,125 - 16394 mRNA_8026 0.14 -0.2
240,263 - 16394 mRNA_8026 0.17 -0.2
240,268 + 16394 mRNA_8026 0.17 -0.2
240,402 - 16394 mRNA_8026 0.21 +0.5
240,540 - 16394 mRNA_8026 0.24 -0.7
240,860 - 16394 mRNA_8026 0.32 +0.5
241,592 + 16394 mRNA_8026 0.51 -0.1
241,676 - 16394 mRNA_8026 0.53 +1.6
241,723 - 16394 mRNA_8026 0.54 +0.7
241,761 - 16394 mRNA_8026 0.55 -1.5
241,769 + 16394 mRNA_8026 0.55 +0.9
241,863 + 16394 mRNA_8026 0.57 +0.5
241,904 + 16394 mRNA_8026 0.58 -0.8
241,958 - 16394 mRNA_8026 0.60 -1.2
241,958 - 16394 mRNA_8026 0.60 +0.6
242,232 + 16394 mRNA_8026 0.67 +0.4
242,276 - 16394 mRNA_8026 0.68 +1.1
242,360 - 16394 mRNA_8026 0.70 +0.0
242,445 - 16394 mRNA_8026 0.72 +0.8
242,591 - 16394 mRNA_8026 0.76 -0.8
242,713 - 16394 mRNA_8026 0.79 -0.6
242,776 - 16394 mRNA_8026 0.80 +0.8
242,795 + 16394 mRNA_8026 0.81 +0.4
242,890 - 16394 mRNA_8026 0.83 +1.6
243,022 - 16394 mRNA_8026 0.86 -1.2
243,065 - 16394 mRNA_8026 0.88 -0.2
243,107 - 16394 mRNA_8026 0.89 +1.7
243,115 + 16394 mRNA_8026 0.89 +3.3
243,180 + +0.2
243,214 + -0.2
243,245 - +1.3
243,255 + +0.0
243,320 + -0.1
243,341 + +0.4
243,356 - +0.0
243,503 - +2.1
243,505 + +0.1
243,515 - -0.7
243,553 + +1.1
243,659 + +1.4
243,827 - +2.0
243,974 - 16395 mRNA_8027 0.17 -0.3
243,976 + 16395 mRNA_8027 0.17 -0.6
243,978 - 16395 mRNA_8027 0.17 +0.7
244,011 - 16395 mRNA_8027 0.21 -0.3
244,081 - 16395 mRNA_8027 0.29 +0.0
244,106 - 16395 mRNA_8027 0.31 +0.8
244,141 - 16395 mRNA_8027 0.35 +0.5

Or see this region's nucleotide sequence