Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8084

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16451 and 16452 are separated by 111 nucleotides16452 and 16453 are separated by 675 nucleotides mRNA_8083: 16451 - K17774 MDM10 mitochondrial distribution and morphology protein 10, at 379,717 to 381,351 16451 mRNA_8084: 16452 - K05351 E1.1.1.9 D-xylulose reductase, at 381,463 to 383,498 16452 mRNA_8085: 16453 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 384,174 to 386,638 16453

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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381,561 - -0.2
382,183 - 16452 mRNA_8084 0.35 -1.4
382,303 - 16452 mRNA_8084 0.41 -0.1
382,322 - 16452 mRNA_8084 0.42 -0.9
382,340 + 16452 mRNA_8084 0.43 -0.9
382,452 + 16452 mRNA_8084 0.49 -1.6
382,494 + 16452 mRNA_8084 0.51 -0.9
383,062 - 16452 mRNA_8084 0.79 -0.6
383,161 - 16452 mRNA_8084 0.83 +0.0
383,183 + 16452 mRNA_8084 0.84 -0.7
383,490 - +1.9
383,491 + +0.9
383,507 + +0.1
383,616 + -1.0
383,621 + +0.8
383,621 + +0.7
383,636 + +0.6
383,639 + +1.2
383,640 - -1.7
383,642 + +0.4
383,653 + +0.5
383,654 - +0.2
383,658 + +0.2
383,660 + -0.7
383,710 - -1.1
383,710 + +0.6
383,721 - +0.3
383,722 - +1.9
383,748 - -0.2
383,750 + -0.4
383,755 + -0.6
383,781 - +0.2
383,913 - +0.5
384,070 + -0.1
384,079 + +0.8

Or see this region's nucleotide sequence