Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8148

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16515 and 16516 are separated by 321 nucleotides16516 and 16517 are separated by 547 nucleotides mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525,577 to 526,736 16515 mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527,058 to 528,382 16516 mRNA_8149: 16517 - KOG1198 Zinc-binding oxidoreductase, at 528,930 to 530,418 16517

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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526,113 + 16515 mRNA_8147 0.46 -0.3
526,194 - 16515 mRNA_8147 0.53 +0.9
526,352 + 16515 mRNA_8147 0.67 -0.1
526,530 - 16515 mRNA_8147 0.82 +0.0
526,683 - +0.9
526,712 + +0.2
526,812 - -0.3
526,814 - +1.1
526,835 - +2.2
526,835 - +1.1
526,835 + -0.4
526,850 + -1.1
526,860 - -0.1
527,471 - 16516 mRNA_8148 0.31 +1.5
527,721 + 16516 mRNA_8148 0.50 +1.4
528,322 - -0.8
528,327 + +0.4
528,481 + +0.2
528,481 + +0.2
528,490 + +1.5
528,498 - -0.3
528,506 - +0.1
528,513 + -0.9
528,549 + +0.5
528,599 - +0.5
528,618 - +0.9
528,625 + +0.0
528,625 + +0.9
528,646 - -0.7
528,651 + -0.4
528,657 - -0.0
528,663 + -0.5
528,671 + +1.3
528,776 + -0.2
528,777 - +0.4
528,779 + -0.7
528,785 + +1.4
528,788 - -0.6
528,817 - -0.1
528,825 + -0.5
528,827 + +0.8
528,827 + -0.4
528,828 - +1.4
528,832 + +1.2
528,841 + +0.8
528,854 + -0.2
528,854 - -0.3
528,854 - -0.1
528,856 + +2.1
528,857 + -1.0
528,864 - -0.1
528,873 + +0.4
528,897 - -0.6
528,898 - +0.6
529,124 - 16517 mRNA_8149 0.13 -0.5
529,137 + 16517 mRNA_8149 0.14 -0.4

Or see this region's nucleotide sequence