Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8171

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16538 and 16539 are separated by 125 nucleotides mRNA_8170: 16538 - BLAST PQ-loop-domain-containing protein [Calocera cornea HH..., at 585,766 to 587,530 16538 mRNA_8171: 16539 - HMMPfam-DnaJ domain-PF00226,ProSiteProfiles-dnaJ domain profile.-PS50076,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 587,656 to 589,364 16539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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586,873 + 16538 mRNA_8170 0.63 -0.0
587,056 - 16538 mRNA_8170 0.73 +1.2
587,181 + 16538 mRNA_8170 0.80 +1.0
587,344 + 16538 mRNA_8170 0.89 +1.8
587,478 - +0.0
587,604 + +0.1
587,618 - -3.2
587,626 + -0.9
588,177 - 16539 mRNA_8171 0.30 -0.2
588,347 + 16539 mRNA_8171 0.40 +0.9
588,781 - 16539 mRNA_8171 0.66 -0.3
589,409 + -1.9
589,652 + -0.4
589,692 + -0.8
589,835 + +0.0
589,987 - -0.4
590,106 - +1.5
590,112 - -0.8
590,123 + -0.7
590,256 + +0.6
590,258 - -0.9
590,268 + -0.5
590,270 + +0.1
590,294 - -0.4

Or see this region's nucleotide sequence