Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8191

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16558 and 16559 are separated by 150 nucleotides16559 and 16560 are separated by 258 nucleotides mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631,383 to 634,543 16558 mRNA_8191: 16559 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 634,694 to 637,536 16559 mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120 16560

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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634,037 - 16558 mRNA_8190 0.84 +0.2
634,375 - -1.7
634,622 - -1.9
634,625 + +2.1
634,631 + +0.1
634,636 + +0.7
634,659 - -0.2
634,671 + +0.5
634,679 + +2.3
634,755 + +1.2
634,795 + +0.8
634,800 + +0.8
634,962 + -0.3
635,069 - 16559 mRNA_8191 0.13 +0.7
635,086 - 16559 mRNA_8191 0.14 +0.3
635,245 - 16559 mRNA_8191 0.19 +0.2
635,382 + 16559 mRNA_8191 0.24 -0.2
635,827 + 16559 mRNA_8191 0.40 -0.1
635,833 + 16559 mRNA_8191 0.40 -0.2
635,955 + 16559 mRNA_8191 0.44 +0.3
636,104 - 16559 mRNA_8191 0.50 -0.1
636,850 - 16559 mRNA_8191 0.76 +0.2
637,324 + +0.3
637,456 - +0.1

Or see this region's nucleotide sequence