Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8211

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16579 and 16580 are separated by 205 nucleotides mRNA_8211: 16579 - K02894 RP-L23e, RPL23 large subunit ribosomal protein L23e, at 679,410 to 680,572 16579 mRNA_8212: 16580 - K17878 NNT1 nicotinamide N-methyltransferase, at 680,778 to 681,996 16580

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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678,412 - -0.9
678,419 + -1.1
678,427 + +1.0
678,524 + -1.1
678,549 - -1.4
678,688 + -0.3
678,695 + +2.1
678,697 - +0.5
678,703 + +0.3
678,725 + -1.2
678,772 + +2.3
678,839 - +0.0
678,849 - -0.5
678,859 + +0.1
678,982 - +0.6
679,000 - +0.1
679,009 - -1.5
679,024 - +0.7
680,895 - -0.8
680,900 - 16580 mRNA_8212 0.10 -0.4
680,931 + 16580 mRNA_8212 0.13 +0.0
681,180 - 16580 mRNA_8212 0.33 -2.0
681,482 - 16580 mRNA_8212 0.58 +0.4
681,514 + 16580 mRNA_8212 0.60 +0.3

Or see this region's nucleotide sequence