Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8315

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16682 and 16683 are separated by 626 nucleotides16683 and 16684 are separated by 108 nucleotides mRNA_8314: 16682 - K03321 TC.SULP sulfate permease, SulP family, at 917,700 to 921,050 16682 mRNA_8315: 16683 - Hypothetical Protein, at 921,677 to 922,300 16683 mRNA_8316: 16684 - KOG2923 Uncharacterized conserved protein, at 922,409 to 922,756 16684

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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921,186 + +1.5
921,490 + +1.3
921,619 - +0.1
921,631 - -1.1
921,643 - +0.4
922,196 - 16683 mRNA_8315 0.83 +1.3
922,204 + 16683 mRNA_8315 0.84 -0.1
922,205 - 16683 mRNA_8315 0.85 -0.8
922,211 + 16683 mRNA_8315 0.86 +0.1
922,214 - 16683 mRNA_8315 0.86 -0.2
922,360 - +0.5
922,505 + 16684 mRNA_8316 0.28 -1.8
922,683 + 16684 mRNA_8316 0.79 -1.4

Or see this region's nucleotide sequence