Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8318

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16685 and 16686 are separated by 315 nucleotides16686 and 16687 are separated by 513 nucleotides mRNA_8317: 16685 - Hypothetical Protein, at 923,361 to 925,022 16685 mRNA_8318: 16686 - ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF54236, at 925,338 to 930,210 16686 mRNA_8319: 16687 - HMMPfam-Protein of unknown function (DUF2370)-PF10176, at 930,724 to 932,736 16687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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924,969 + -2.3
925,265 - -0.5
925,297 - +0.1
925,883 - 16686 mRNA_8318 0.11 -0.4
925,975 + 16686 mRNA_8318 0.13 +0.4
926,766 - 16686 mRNA_8318 0.29 +0.3
926,985 - 16686 mRNA_8318 0.34 +1.6
927,169 + 16686 mRNA_8318 0.38 -0.8
928,242 - 16686 mRNA_8318 0.60 +0.9
928,527 + 16686 mRNA_8318 0.65 +0.3
928,596 - 16686 mRNA_8318 0.67 +1.1
928,625 + 16686 mRNA_8318 0.67 +0.7
928,843 - 16686 mRNA_8318 0.72 +0.5
929,051 + 16686 mRNA_8318 0.76 +0.7
929,990 - +0.9
930,139 - +0.4
930,151 + +0.4
930,426 - -0.1
930,426 - +1.0
930,437 + +0.4
930,450 - -0.3
930,459 + -1.4
930,463 - -1.0
930,750 - +0.2

Or see this region's nucleotide sequence