Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8324

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16691 and 16692 are separated by 155 nucleotides16692 and 16693 are separated by 560 nucleotides mRNA_8323: 16691 - HMMPfam-Abscisic acid G-protein coupled receptor-PF12430,HMMPfam-Protein of unknown function (DUF3735)-PF12537, at 938,985 to 941,043 16691 mRNA_8324: 16692 - K14026 SEL1, SEL1L SEL1 protein, at 941,199 to 945,074 16692 mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945,635 to 946,237 16693

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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940,380 - 16691 mRNA_8323 0.68 +0.3
940,523 + 16691 mRNA_8323 0.75 +0.2
940,551 + 16691 mRNA_8323 0.76 +1.3
940,784 - 16691 mRNA_8323 0.87 +0.9
940,785 - 16691 mRNA_8323 0.87 +0.1
940,828 + 16691 mRNA_8323 0.90 -1.0
940,844 + +0.1
940,916 + +0.5
940,940 + +0.1
940,980 + -0.2
941,079 + -0.3
941,081 - -1.4
941,131 - +1.0
941,134 + -0.6
941,149 + -1.8
941,427 + +0.2
941,431 + -0.4
941,833 - 16692 mRNA_8324 0.16 -0.7
941,833 + 16692 mRNA_8324 0.16 -2.6
942,001 - 16692 mRNA_8324 0.21 -1.1
942,596 + 16692 mRNA_8324 0.36 -0.9
943,339 - 16692 mRNA_8324 0.55 -1.0
943,499 - 16692 mRNA_8324 0.59 +0.3
943,625 - 16692 mRNA_8324 0.63 -0.8
943,777 + 16692 mRNA_8324 0.67 -1.8
944,361 - 16692 mRNA_8324 0.82 -0.1
944,643 - 16692 mRNA_8324 0.89 +0.6
944,803 + -0.5
945,120 + -1.1
945,430 + -0.7
945,995 - 16693 mRNA_8325 0.60 +0.5

Or see this region's nucleotide sequence