Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8337

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16704 and 16705 are separated by 420 nucleotides16705 and 16706 are separated by 532 nucleotides mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966,219 to 967,737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361 16706

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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967,215 + 16704 mRNA_8336 0.66 +0.5
967,236 + 16704 mRNA_8336 0.67 -0.4
967,279 + 16704 mRNA_8336 0.70 +0.2
967,504 + 16704 mRNA_8336 0.85 +0.9
967,657 + +0.6
967,666 + +0.1
967,796 + +0.1
967,803 - -0.1
967,807 - -0.8
967,809 + +0.1
967,811 - +1.5
967,813 + +1.4
967,815 - -0.3
967,837 - -0.6
967,850 + +1.5
967,861 + -0.2
967,863 - -1.5
968,012 + -0.7
968,034 - +1.9
968,128 - +0.0
968,435 - 16705 mRNA_8337 0.14 -0.0
968,608 - 16705 mRNA_8337 0.23 +0.2
968,717 + 16705 mRNA_8337 0.28 -0.5
968,742 + 16705 mRNA_8337 0.29 +0.1
969,034 + 16705 mRNA_8337 0.44 +0.3
969,321 + 16705 mRNA_8337 0.59 +1.7
969,341 + 16705 mRNA_8337 0.60 -0.0
969,469 + 16705 mRNA_8337 0.66 -0.4
969,592 - 16705 mRNA_8337 0.72 +0.1
969,746 - 16705 mRNA_8337 0.80 +0.9
969,895 - 16705 mRNA_8337 0.87 +0.2
969,904 + 16705 mRNA_8337 0.88 +3.6
970,019 + +1.4
970,078 + +0.7
970,083 + -1.3
970,371 + -0.1
970,375 - +1.4
970,376 + +0.3
970,377 + -0.2
970,409 + +0.5
970,431 + -0.0
970,471 + +0.4
970,487 - -0.6
970,495 + -0.0
970,503 - +1.2
970,620 - +1.1
970,793 + 16706 mRNA_8338 0.17 -0.0

Or see this region's nucleotide sequence