Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8357

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16724 and 16725 are separated by 355 nucleotides16725 and 16726 are separated by 168 nucleotides mRNA_8356: 16724 - K13985 NAPEPLD N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D, at 1,018,843 to 1,020,921 16724 mRNA_8357: 16725 - K01739 metB cystathionine gamma-synthase, at 1,021,277 to 1,023,018 16725 mRNA_8358: 16726 - HMMPfam-Bin/amphiphysin/Rvs domain for vesicular trafficking-PF10455,HMMPfam-Fungal specific transcription factor domain-PF11951,SMART--SM00721,SUPERFAMILY--SSF103657, at 1,023,187 to 1,029,066 16726

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,020,317 - 16724 mRNA_8356 0.71 +0.7
1,020,345 + 16724 mRNA_8356 0.72 +1.2
1,020,455 + 16724 mRNA_8356 0.78 -0.3
1,020,581 - 16724 mRNA_8356 0.84 +0.8
1,020,588 + 16724 mRNA_8356 0.84 +0.3
1,020,600 - 16724 mRNA_8356 0.85 +0.5
1,020,752 + +1.2
1,020,993 - +1.7
1,021,056 - +0.1
1,021,082 + +1.6
1,021,157 - +0.3
1,021,158 + +0.7
1,021,169 + -0.1
1,021,196 - -0.8
1,021,208 - +0.7
1,021,246 + +0.8
1,021,249 - +0.1
1,021,338 + -0.1
1,021,378 - +0.6
1,021,782 + 16725 mRNA_8357 0.29 +0.8
1,021,950 - 16725 mRNA_8357 0.39 +1.4
1,021,974 - 16725 mRNA_8357 0.40 +1.4
1,022,143 - 16725 mRNA_8357 0.50 +0.2
1,022,259 - 16725 mRNA_8357 0.56 +1.6
1,022,378 - 16725 mRNA_8357 0.63 +1.4
1,022,445 - 16725 mRNA_8357 0.67 -0.5
1,022,672 - 16725 mRNA_8357 0.80 -1.2
1,022,794 - 16725 mRNA_8357 0.87 +1.3
1,022,818 + 16725 mRNA_8357 0.88 +1.4
1,023,877 - 16726 mRNA_8358 0.12 +1.2
1,023,910 - 16726 mRNA_8358 0.12 +0.2
1,023,947 + 16726 mRNA_8358 0.13 +1.1
1,024,004 + 16726 mRNA_8358 0.14 +0.5

Or see this region's nucleotide sequence