Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_18

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8385 and 8386 are separated by 330 nucleotides8386 and 8387 are separated by 379 nucleotides mRNA_17: 8385 - K00856 E2.7.1.20, ADK adenosine kinase, at 48,620 to 50,142 8385 mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50,473 to 51,921 8386 mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52,301 to 54,654 8387

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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49,948 + 8385 mRNA_17 0.87 -1.0
50,542 + -1.2
50,663 + 8386 mRNA_18 0.13 -1.2
50,904 - 8386 mRNA_18 0.30 +2.8
50,943 + 8386 mRNA_18 0.32 +0.2
50,946 - 8386 mRNA_18 0.33 +0.4
51,073 - 8386 mRNA_18 0.41 -0.3
51,155 + 8386 mRNA_18 0.47 +0.0
51,432 - 8386 mRNA_18 0.66 +0.4
51,550 + 8386 mRNA_18 0.74 +0.1
51,561 - 8386 mRNA_18 0.75 -0.1
51,562 + 8386 mRNA_18 0.75 +0.2
51,654 + 8386 mRNA_18 0.82 +1.6
51,655 - 8386 mRNA_18 0.82 +1.5
51,845 - +1.2
51,845 + +0.8
51,846 + +0.1
51,962 - +0.1
52,120 + -0.1
52,128 - -0.1
52,132 - +0.1
52,157 + +0.3
52,815 + 8387 mRNA_19 0.22 +0.7
52,819 - 8387 mRNA_19 0.22 -1.2
52,852 - 8387 mRNA_19 0.23 -0.9
52,876 - 8387 mRNA_19 0.24 +0.3
52,889 - 8387 mRNA_19 0.25 -0.0
52,897 + 8387 mRNA_19 0.25 +0.3

Or see this region's nucleotide sequence