Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_69

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8436 and 8437 are separated by 196 nucleotides8437 and 8438 are separated by 202 nucleotides mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158,685 to 163,751 8436 mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163,948 to 165,826 8437 mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166,029 to 167,085 8438

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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163,919 + +1.2
163,920 + +0.7
164,051 - +0.0
164,314 + 8437 mRNA_69 0.19 +0.3
164,349 - 8437 mRNA_69 0.21 +0.1
164,908 + 8437 mRNA_69 0.51 -0.2
165,182 - 8437 mRNA_69 0.66 -0.2
165,201 + 8437 mRNA_69 0.67 +0.2
165,467 + 8437 mRNA_69 0.81 +0.8
165,660 - -0.5
165,771 + +1.0
165,799 + +0.2
165,801 - -0.3
165,832 + +0.6
165,875 - +0.9
165,879 - +0.8
165,882 + +0.4
165,888 - -0.1
165,897 - +0.3
165,899 - -0.6
165,912 - +0.1
165,912 + -1.1
165,926 - -0.0
165,940 + -4.0
165,940 + -2.2
165,942 - -1.3
165,951 - +0.8
165,952 - +2.0
165,952 + +0.8
165,953 + -0.5
165,966 - +1.4
165,967 + +0.1
166,098 + +0.1
166,099 - +0.9
166,103 + +0.1
166,113 - -0.3
166,117 + +1.6
166,117 + +0.4
166,126 + -1.0
166,255 + 8438 mRNA_70 0.21 +0.7
166,263 - 8438 mRNA_70 0.22 +0.6
166,400 + 8438 mRNA_70 0.35 +2.5
166,406 - 8438 mRNA_70 0.36 +0.4

Or see this region's nucleotide sequence