Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_74

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8441 and 8442 are separated by 274 nucleotides8442 and 8443 are separated by 410 nucleotides mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169,827 to 173,814 8441 mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174,089 to 180,350 8442 mRNA_75: 8443 - K00606 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 180,761 to 182,108 8443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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173,174 - 8441 mRNA_73 0.84 +0.4
173,424 - +2.3
173,424 + +1.3
173,518 - +1.1
173,553 - +2.5
173,837 + +1.6
173,862 + +0.8
174,086 - +0.5
174,096 - -0.0
174,298 + -0.4
174,298 + -0.1
174,532 + +0.1
174,678 + -0.3
175,095 + 8442 mRNA_74 0.16 +0.3
175,157 - 8442 mRNA_74 0.17 +0.5
175,289 - 8442 mRNA_74 0.19 +1.4
175,299 + 8442 mRNA_74 0.19 +0.6
175,299 + 8442 mRNA_74 0.19 +1.0
175,316 + 8442 mRNA_74 0.20 +0.5
175,319 - 8442 mRNA_74 0.20 +0.4
175,385 - 8442 mRNA_74 0.21 +0.2
175,451 - 8442 mRNA_74 0.22 -0.1
175,644 - 8442 mRNA_74 0.25 +0.6
175,761 - 8442 mRNA_74 0.27 -1.4
175,765 - 8442 mRNA_74 0.27 +0.4
176,077 + 8442 mRNA_74 0.32 +1.2
176,138 + 8442 mRNA_74 0.33 +1.2
176,139 + 8442 mRNA_74 0.33 +0.2
176,147 + 8442 mRNA_74 0.33 +1.2
176,161 + 8442 mRNA_74 0.33 +1.0
176,337 - 8442 mRNA_74 0.36 +1.3
176,372 - 8442 mRNA_74 0.36 -0.8
176,389 - 8442 mRNA_74 0.37 +0.2
176,396 + 8442 mRNA_74 0.37 -0.3
176,475 - 8442 mRNA_74 0.38 +1.7
176,657 - 8442 mRNA_74 0.41 -0.4
176,777 - 8442 mRNA_74 0.43 +1.8
177,387 + 8442 mRNA_74 0.53 +1.3
177,680 + 8442 mRNA_74 0.57 +0.7
177,811 - 8442 mRNA_74 0.59 -0.5
177,820 - 8442 mRNA_74 0.60 -0.0
177,921 - 8442 mRNA_74 0.61 +1.8
178,039 + 8442 mRNA_74 0.63 -0.3
178,086 - 8442 mRNA_74 0.64 +1.1
178,139 - 8442 mRNA_74 0.65 +0.4
178,177 - 8442 mRNA_74 0.65 -0.8
178,220 + 8442 mRNA_74 0.66 -0.3
178,225 + 8442 mRNA_74 0.66 -1.7
178,264 + 8442 mRNA_74 0.67 -1.8
178,348 - 8442 mRNA_74 0.68 +0.9
178,365 - 8442 mRNA_74 0.68 -0.1
178,370 + 8442 mRNA_74 0.68 +0.6
178,377 + 8442 mRNA_74 0.68 +1.0
178,568 + 8442 mRNA_74 0.72 +0.1
178,607 + 8442 mRNA_74 0.72 -1.8
178,796 - 8442 mRNA_74 0.75 +0.8
178,945 + 8442 mRNA_74 0.78 +1.5
179,244 + 8442 mRNA_74 0.82 +1.0
179,397 + 8442 mRNA_74 0.85 -1.9
179,411 + 8442 mRNA_74 0.85 +0.7
179,415 + 8442 mRNA_74 0.85 +0.5
179,537 - 8442 mRNA_74 0.87 -0.7
180,123 - -1.3
180,125 - +0.4
180,135 + +2.0
180,143 - +0.9
180,149 + +0.3
180,430 + +0.1
180,431 - -2.3
180,435 - +1.9
180,437 - +1.0
180,448 - +1.6
180,455 + +0.4
180,586 - -0.5
180,721 + -1.1
180,893 - -1.3
180,894 + +1.6
181,040 - 8443 mRNA_75 0.21 +0.7

Or see this region's nucleotide sequence