Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_150

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8517 and 8518 are separated by 419 nucleotides8518 and 8519 are separated by 956 nucleotides mRNA_149: 8517 - Hypothetical Protein, at 374,872 to 375,333 8517 mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375,753 to 378,108 8518 mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379,065 to 379,994 8519

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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374,759 - -0.5
374,820 + -0.2
374,824 - +0.9
374,942 - 8517 mRNA_149 0.15 -0.5
374,983 + 8517 mRNA_149 0.24 +0.1
375,100 + 8517 mRNA_149 0.49 -0.1
375,131 + 8517 mRNA_149 0.56 +0.7
375,138 + 8517 mRNA_149 0.58 +2.0
375,140 + 8517 mRNA_149 0.58 +2.6
375,249 + 8517 mRNA_149 0.82 +2.2
375,258 + 8517 mRNA_149 0.84 -0.1
376,011 + 8518 mRNA_150 0.11 +0.2
376,300 - 8518 mRNA_150 0.23 +0.1
376,896 + 8518 mRNA_150 0.49 +0.8
377,138 - 8518 mRNA_150 0.59 +2.0
377,142 - 8518 mRNA_150 0.59 +0.2
377,304 - 8518 mRNA_150 0.66 +0.7
377,442 - 8518 mRNA_150 0.72 +0.9
377,586 + 8518 mRNA_150 0.78 -0.6
377,903 - +2.2
378,023 - -0.1
378,076 - +0.3
378,289 - -0.4
378,324 - +2.0
378,327 + +1.5
378,428 + -0.6
378,443 - +0.6
378,465 + +0.2
378,468 - +0.3
378,500 + -0.7
378,610 - -0.9
378,611 - +2.1
378,613 - +3.3
378,614 + -0.2
378,614 - -0.4
378,616 + -0.6
378,618 + +1.9
378,619 - +0.1
378,624 + -0.1
378,629 - +1.0
378,639 - +0.1
378,658 + -1.3
378,663 - +0.3
378,759 - -0.1
378,763 + -1.0
378,769 + -0.7
378,794 - +0.1
378,797 - +1.5
378,797 - -0.6
378,799 - -0.2
378,800 + +1.3
378,804 + -1.1
378,808 + +0.2
378,812 + +0.1
378,813 - +0.0
378,825 + +1.2
378,827 - -0.7
378,829 - +1.1
378,831 - -1.1
378,875 + +0.2
378,954 - -0.8
378,957 - -0.4
378,959 - +0.9
378,994 + +0.7
378,995 - -1.0

Or see this region's nucleotide sequence