Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_201

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8568 and 8569 are separated by 622 nucleotides8569 and 8570 are separated by 919 nucleotides mRNA_200: 8568 - K15541 MPE1 protein MPE1, at 489,424 to 492,149 8568 mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492,772 to 495,021 8569 mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495,941 to 499,437 8570

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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492,370 - +1.0
492,372 + -0.2
492,377 - +0.1
492,504 - +0.4
492,515 - +1.0
492,521 + +0.1
492,522 - +0.3
492,526 + +0.6
492,527 + -0.7
492,535 + +1.2
492,536 - +2.7
492,552 - +0.2
492,553 - -0.3
492,682 + -0.6
492,813 - -0.4
492,822 + -0.3
492,832 + +0.5
493,255 + 8569 mRNA_201 0.21 -0.1
493,260 - 8569 mRNA_201 0.22 +0.1
493,382 - 8569 mRNA_201 0.27 +0.0
493,392 + 8569 mRNA_201 0.28 -0.7
493,674 + 8569 mRNA_201 0.40 -0.2
493,677 + 8569 mRNA_201 0.40 -0.7
493,688 - 8569 mRNA_201 0.41 -1.1
493,696 + 8569 mRNA_201 0.41 -1.5
494,868 - +0.5
495,030 + +0.4
495,125 - +0.9
495,147 - +1.5
495,152 + +0.2
495,155 + +1.1
495,155 - -0.1
495,157 - +3.6
495,159 - +0.2
495,162 + +0.5
495,162 + +1.3
495,168 - -0.3
495,169 - +0.4
495,177 - +1.5
495,179 + +0.5
495,180 - +1.7
495,181 + +1.6
495,181 + +1.4
495,182 + -0.2
495,182 + +0.7
495,183 + +0.8
495,186 - +2.8
495,189 + +0.2
495,192 + -1.2
495,201 - -1.1
495,209 + -0.2
495,247 + +0.7
495,495 - +0.8
495,505 - -0.5

Or see this region's nucleotide sequence