Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_225

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8592 and 8593 are separated by 423 nucleotides8593 and 8594 are separated by 83 nucleotides mRNA_224: 8592 - K07300 chaA, CAX Ca2+-H+ antiporter, at 554,235 to 556,538 8592 mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556,962 to 559,070 8593 mRNA_226: 8594 - KOG2861 Uncharacterized conserved protein, at 559,154 to 560,792 8594

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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556,428 - +0.3
556,431 + -0.5
556,459 - -1.4
556,737 - -0.4
556,740 + +0.3
556,741 + +2.7
556,744 - +0.5
556,745 + +0.2
556,745 + -0.1
556,746 - -0.7
556,764 - +0.5
556,766 + +1.6
556,769 - +0.4
556,770 + +0.3
556,793 - +0.5
556,924 - +0.2
556,946 - -0.9
556,981 + -0.0
557,952 - 8593 mRNA_225 0.47 -0.4
558,134 - 8593 mRNA_225 0.56 -0.6
558,406 + 8593 mRNA_225 0.68 -0.0
558,443 + 8593 mRNA_225 0.70 +0.1
558,954 - -0.5
559,253 - +2.4
559,275 + +0.5
559,300 + -0.1
559,528 - 8594 mRNA_226 0.23 +0.0
559,694 + 8594 mRNA_226 0.33 -0.4
559,701 + 8594 mRNA_226 0.33 +0.5
559,855 + 8594 mRNA_226 0.43 +0.8

Or see this region's nucleotide sequence