Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_269

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8636 and 8637 are separated by 129 nucleotides8637 and 8638 are separated by 272 nucleotides mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642,489 to 643,919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644,049 to 645,349 8637 mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645,622 to 646,120 8638

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
643,064 + 8636 mRNA_268 0.40 +1.1
643,463 - 8636 mRNA_268 0.68 +0.1
643,550 - 8636 mRNA_268 0.74 +1.4
643,627 + 8636 mRNA_268 0.80 +1.3
643,687 - 8636 mRNA_268 0.84 +1.0
643,854 + -1.3
643,862 + +3.0
644,252 + 8637 mRNA_269 0.16 -0.6
644,404 - 8637 mRNA_269 0.27 -0.3
644,465 - 8637 mRNA_269 0.32 -0.3
644,485 - 8637 mRNA_269 0.34 +0.7
644,714 - 8637 mRNA_269 0.51 -0.5
644,871 + 8637 mRNA_269 0.63 -1.1
645,072 - 8637 mRNA_269 0.79 +0.9
646,239 + +0.9
646,245 + -0.5
646,253 + +0.4
646,255 + +0.6
646,272 - -0.6
646,275 + -0.9

Or see this region's nucleotide sequence