Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_333

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8700 and 8701 are separated by 582 nucleotides mRNA_332: 8700 - HMMPfam-DSS1/SEM1 family-PF05160, at 788,095 to 788,775 8700 mRNA_333: 8701 - Hypothetical Protein, at 789,358 to 791,102 8701

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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788,796 + -0.3
788,806 - +0.6
788,807 + +1.0
788,827 + +1.3
788,829 + -0.1
788,958 - +1.3
788,959 + +0.1
789,091 + +0.0
789,119 - -0.0
789,187 - +0.5
789,204 - +0.7
789,238 - -1.4
789,683 + 8701 mRNA_333 0.19 -0.0
789,694 - 8701 mRNA_333 0.19 -0.3
789,855 - 8701 mRNA_333 0.28 +0.2
790,108 - 8701 mRNA_333 0.43 -0.5
790,133 + 8701 mRNA_333 0.44 -1.7
790,250 + 8701 mRNA_333 0.51 +2.1
790,255 + 8701 mRNA_333 0.51 +0.6
790,270 - 8701 mRNA_333 0.52 +0.4
790,420 + 8701 mRNA_333 0.61 +2.0
790,536 - 8701 mRNA_333 0.68 -0.1
790,577 + 8701 mRNA_333 0.70 -2.2
790,832 + 8701 mRNA_333 0.84 -0.2
790,838 - 8701 mRNA_333 0.85 +0.1
790,854 - 8701 mRNA_333 0.86 +0.0
790,866 + 8701 mRNA_333 0.86 +0.0
790,994 + +0.1
790,997 - +0.1
791,010 - +1.5
791,014 - -0.0
791,022 + -0.3
791,147 + +0.5
791,150 + +2.3
791,157 - +0.6
791,158 - -0.3
791,167 + +0.6
791,168 + +0.5
791,170 + +1.4
791,177 + -0.1
791,292 + +0.8
791,298 - +1.7
791,299 - -0.4
791,303 + +1.2
791,311 - -1.7
791,311 - -0.5
791,314 + -1.5
791,314 + -0.9
791,317 - +0.6
791,321 + +1.0
791,329 - +0.2
791,416 - +0.0
791,435 - +0.7
791,437 + +0.3
791,439 + -0.2
791,441 - -0.1
791,445 - +0.1
791,449 + -0.4
791,450 + +0.4
791,452 - +0.8
791,455 - +0.8
791,462 + +0.2
791,475 - +1.5
791,483 - -1.5
791,489 + +0.5
791,494 - +0.2
791,496 - +0.4
791,496 - +0.4
791,497 + -2.4
791,513 - +2.4
791,514 + +2.0
791,522 - -0.6
791,532 - -0.6
791,533 + -1.2
791,536 - -0.3
791,551 + -0.0
791,618 - +0.5
791,627 - -0.4
791,631 - -0.1
791,641 - +2.5
791,644 + +0.3
791,645 + -0.5
791,649 + +1.0
791,653 - +0.5
791,653 + +1.9
791,660 - -0.1
791,666 - +0.7
791,670 - +1.1
791,674 + +0.0
791,685 - +0.1
791,693 + -0.1
791,697 + -0.6
791,706 - +0.6
791,725 - +1.1
791,731 + -0.2
791,732 + +0.9
791,733 - -2.7
791,749 - +0.1
791,762 + -0.4
791,909 - -0.5
791,916 - +1.3
791,918 + +0.0
792,054 + -0.8
792,068 - +0.9

Or see this region's nucleotide sequence