Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_347

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8714 and 8715 are separated by 189 nucleotides8715 and 8716 are separated by 216 nucleotides mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810,935 to 812,073 8714 mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812,263 to 813,594 8715 mRNA_348: 8716 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 813,811 to 815,656 8716

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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811,779 - 8714 mRNA_346 0.74 +0.6
811,936 + 8714 mRNA_346 0.88 -1.1
812,083 + -0.9
812,210 - +0.0
812,408 - 8715 mRNA_347 0.11 +0.4
812,431 + 8715 mRNA_347 0.13 +0.2
812,504 - 8715 mRNA_347 0.18 +0.6
812,505 + 8715 mRNA_347 0.18 -0.4
812,507 + 8715 mRNA_347 0.18 -0.6
812,524 - 8715 mRNA_347 0.20 +0.5
812,532 + 8715 mRNA_347 0.20 -2.0
812,535 + 8715 mRNA_347 0.20 +0.9
812,917 - 8715 mRNA_347 0.49 +0.2
812,959 - 8715 mRNA_347 0.52 +0.7
812,966 + 8715 mRNA_347 0.53 +0.8
813,126 + 8715 mRNA_347 0.65 +0.2
813,181 + 8715 mRNA_347 0.69 -1.4
813,668 - -0.0
813,707 - +0.4
813,791 - +0.5
813,942 - -0.3
814,248 + 8716 mRNA_348 0.24 -0.2
814,377 - 8716 mRNA_348 0.31 -2.9
814,392 - 8716 mRNA_348 0.31 -1.0
814,521 + 8716 mRNA_348 0.38 +2.1
814,542 - 8716 mRNA_348 0.40 -0.7

Or see this region's nucleotide sequence