Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_350

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8717 and 8718 are separated by 199 nucleotides8718 and 8719 are separated by 386 nucleotides mRNA_349: 8717 - K12825 SF3A1, SAP114 splicing factor 3A subunit 1, at 816,569 to 819,001 8717 mRNA_350: 8718 - K17439 MRPL35 large subunit ribosomal protein L35, at 819,201 to 820,840 8718 mRNA_351: 8719 - BLAST carbohydrate-binding module family 13 protein [Rhizoc..., at 821,227 to 823,466 8719

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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819,105 + -1.5
819,237 - +0.8
820,710 - +1.4
820,725 + +0.1
820,729 - +0.4
820,730 - +2.2
820,750 - -1.5
820,865 + +0.6
820,879 - +0.3
820,894 - -0.0
820,899 - -0.2
820,900 + -0.7
820,925 - +0.8
820,925 - -0.5
820,925 + -2.2
820,951 + -0.9
820,960 - +0.6
820,967 - -0.0
820,973 + +0.3
820,992 + +0.3
820,997 - -0.8
820,998 - +0.4
821,013 + +0.4
821,014 - +2.9
821,017 - +0.7
821,019 - -0.7
821,019 + -0.0
821,048 - +0.0
821,055 - +0.2
821,057 + +0.0
821,064 + -0.7
821,071 + +1.8
821,074 + +0.6
821,075 - +0.3
821,182 - -1.0
821,209 + -0.3
821,211 - +0.5
821,213 - +3.1
821,213 - +0.5
821,215 + +0.3
821,222 + +0.7
821,224 - +0.2
821,225 + +0.9
821,367 + +0.2
821,392 + +0.7
821,401 + +0.2
821,415 + -0.8
821,441 - +1.9
821,442 + +0.7
821,443 - +0.4
821,496 + 8719 mRNA_351 0.12 +1.0
821,501 - 8719 mRNA_351 0.12 +0.7
821,522 + 8719 mRNA_351 0.13 +0.5
821,568 + 8719 mRNA_351 0.15 +0.4
821,623 - 8719 mRNA_351 0.18 +0.0
821,819 - 8719 mRNA_351 0.26 +0.5

Or see this region's nucleotide sequence