Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_404

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8771 and 8772 are separated by 430 nucleotides8772 and 8773 are separated by 433 nucleotides mRNA_403: 8771 - Hypothetical Protein, at 937,327 to 938,664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939,095 to 942,093 8772 mRNA_405: 8773 - KOG4563 Cell cycle-regulated histone H1-binding protein, at 942,527 to 943,923 8773

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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938,188 - 8771 mRNA_403 0.64 -0.3
938,327 - 8771 mRNA_403 0.75 +0.8
938,351 - 8771 mRNA_403 0.77 -0.6
938,481 + 8771 mRNA_403 0.86 -3.1
938,532 - -0.1
938,545 + +1.2
938,621 + -0.8
938,654 + +2.4
939,082 - +0.0
939,087 + -0.1
939,114 + +2.9
939,190 + -1.7
939,393 + +0.9
939,592 - 8772 mRNA_404 0.17 -0.6
940,557 + 8772 mRNA_404 0.49 -0.4
940,767 - 8772 mRNA_404 0.56 +0.3
940,870 - 8772 mRNA_404 0.59 -0.5
940,893 - 8772 mRNA_404 0.60 +1.1
941,120 + 8772 mRNA_404 0.68 +1.6
941,252 + 8772 mRNA_404 0.72 +1.2
941,513 - 8772 mRNA_404 0.81 -0.3
941,543 + 8772 mRNA_404 0.82 +0.1
941,677 - 8772 mRNA_404 0.86 -0.7
941,927 + -0.7
941,940 + +1.4
941,973 + -0.3
941,973 - -0.6
941,978 + +0.7
942,098 - +2.2
942,116 + +1.8
942,123 - +0.2
942,123 + -0.7
942,125 + +0.5
942,128 + +0.8
942,132 - -0.8
942,146 + -2.4
942,165 + -0.4
942,174 + +1.2
942,175 - -1.1
942,179 + +0.0
942,181 + -1.1
942,196 + -0.0
942,202 + +0.5
942,206 + -0.4
942,208 - -0.4
942,209 + +0.4
942,210 + +0.5
942,211 + +0.1
942,225 - +1.3
942,242 + -0.6

Or see this region's nucleotide sequence