Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_462

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8829 and 8830 are separated by 505 nucleotides8830 and 8831 are separated by 553 nucleotides mRNA_461: 8829 - Hypothetical Protein, at 1,073,341 to 1,074,099 8829 mRNA_462: 8830 - Hypothetical Protein, at 1,074,605 to 1,075,532 8830 mRNA_463: 8831 - Hypothetical Protein, at 1,076,086 to 1,077,358 8831

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,073,702 + 8829 mRNA_461 0.48 +0.6
1,073,881 - 8829 mRNA_461 0.71 +0.2
1,074,131 + +0.5
1,074,134 - +1.6
1,074,145 - -1.6
1,074,146 + -0.8
1,074,181 + +1.0
1,074,182 - +1.0
1,074,244 - -0.3
1,074,310 - +0.0
1,074,313 + +0.7
1,074,313 - +0.3
1,074,321 - +0.5
1,074,324 + -0.4
1,074,345 - +0.3
1,074,348 - +1.2
1,074,650 + +0.3
1,074,792 + 8830 mRNA_462 0.20 +0.2
1,075,504 + +0.5
1,075,507 + +0.4
1,075,507 + -0.6
1,075,508 - +0.8
1,075,511 + -0.0
1,075,527 - +0.8
1,075,630 + +0.6
1,075,680 + +0.7
1,075,720 - +1.3
1,075,809 + -0.1
1,075,972 - -0.6
1,076,089 - +1.0
1,076,097 - -0.9
1,076,100 + +0.9
1,076,250 + 8831 mRNA_463 0.13 +1.4

Or see this region's nucleotide sequence