Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_464

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8831 and 8832 are separated by 311 nucleotides8832 and 8833 are separated by 72 nucleotides mRNA_463: 8831 - Hypothetical Protein, at 1,076,086 to 1,077,358 8831 mRNA_464: 8832 - Hypothetical Protein, at 1,077,670 to 1,079,089 8832 mRNA_465: 8833 - K10858 PMS2 DNA mismatch repair protein PMS2, at 1,079,162 to 1,083,033 8833

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,076,852 + 8831 mRNA_463 0.60 -0.7
1,077,225 + 8831 mRNA_463 0.89 -2.0
1,077,240 + -0.3
1,077,544 - +0.7
1,077,998 + 8832 mRNA_464 0.23 +0.3
1,078,044 + 8832 mRNA_464 0.26 +0.4
1,078,142 - 8832 mRNA_464 0.33 -0.1
1,078,541 + 8832 mRNA_464 0.61 +0.5
1,078,719 - 8832 mRNA_464 0.74 +1.3
1,078,749 + 8832 mRNA_464 0.76 +1.6
1,079,318 - -0.9
1,079,338 + +0.7
1,079,494 - -0.2
1,079,603 + 8833 mRNA_465 0.11 +0.5

Or see this region's nucleotide sequence