Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_547

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8914 and 8915 are separated by 251 nucleotides8915 and 8916 are separated by 575 nucleotides mRNA_546: 8914 - K00799 GST, gst glutathione S-transferase, at 1,298,658 to 1,299,726 8914 mRNA_547: 8915 - KOG2385 Uncharacterized conserved protein, at 1,299,978 to 1,303,835 8915 mRNA_548: 8916 - K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16, at 1,304,411 to 1,305,873 8916

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,299,004 - 8914 mRNA_546 0.32 -0.8
1,299,005 + 8914 mRNA_546 0.32 -0.6
1,299,125 + 8914 mRNA_546 0.44 -1.6
1,299,132 - 8914 mRNA_546 0.44 -0.6
1,299,560 + 8914 mRNA_546 0.84 +0.5
1,299,683 - +1.8
1,299,691 - -0.1
1,299,858 + +0.2
1,299,859 - +2.0
1,299,873 - +0.7
1,299,873 - +0.2
1,299,877 + +2.0
1,299,896 + +2.2
1,299,912 + +0.8
1,299,912 - +0.4
1,299,918 + +0.4
1,299,942 - +0.5
1,299,949 - +1.5
1,299,949 - +0.1
1,299,950 + +0.6
1,299,951 - +0.4
1,300,068 - -0.2
1,300,241 + -2.2
1,300,358 - -0.5
1,300,527 + 8915 mRNA_547 0.14 +0.9
1,302,748 - 8915 mRNA_547 0.72 -0.5
1,303,132 - 8915 mRNA_547 0.82 +1.2
1,303,820 + -1.2
1,303,862 + +1.4
1,303,950 - -0.4
1,304,010 - -0.1
1,304,021 + +0.8
1,304,021 - -1.7
1,304,151 + -0.2
1,304,156 - +0.5
1,304,291 - +0.2
1,304,536 + -0.6

Or see this region's nucleotide sequence