Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_549

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8916 and 8917 are separated by 732 nucleotides8917 and 8918 are separated by 189 nucleotides mRNA_548: 8916 - K15084 SLC25A16, GDA, LEU5 solute carrier family 25 (mitochondrial carrier protein), member 16, at 1,304,411 to 1,305,873 8916 mRNA_549: 8917 - K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1, at 1,306,606 to 1,311,810 8917 mRNA_550: 8918 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 1,312,000 to 1,313,154 8918

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,305,915 - +0.8
1,305,918 - +0.9
1,305,925 + -0.3
1,305,929 - +1.3
1,305,942 + +0.3
1,305,948 + -1.6
1,305,954 + +1.0
1,306,065 + +0.6
1,306,081 + +0.1
1,306,099 + -0.6
1,307,552 + 8917 mRNA_549 0.18 -1.9
1,311,216 - 8917 mRNA_549 0.89 -0.8
1,311,746 + +0.0
1,311,777 + +0.2
1,311,928 - -0.8
1,311,974 + -0.3
1,312,120 + 8918 mRNA_550 0.10 -0.6
1,312,380 + 8918 mRNA_550 0.33 +0.4
1,312,539 + 8918 mRNA_550 0.47 -1.4

Or see this region's nucleotide sequence