Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_555

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8922 and 8923 are separated by 445 nucleotides8923 and 8924 are separated by 288 nucleotides mRNA_554: 8922 - K13337 PEX19 peroxin-19, at 1,319,460 to 1,321,018 8922 mRNA_555: 8923 - K03115 CSNK2B casein kinase II subunit beta, at 1,321,464 to 1,322,533 8923 mRNA_556: 8924 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 1,322,822 to 1,323,921 8924

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,321,068 + +0.5
1,321,070 + +0.3
1,321,071 + -0.2
1,321,076 - -3.8
1,321,077 - -1.8
1,321,080 - -0.2
1,321,085 - +0.7
1,321,087 + +0.6
1,321,282 + +0.7
1,322,897 + +0.4
1,323,003 + 8924 mRNA_556 0.16 +1.3
1,323,459 - 8924 mRNA_556 0.58 +2.0
1,323,488 + 8924 mRNA_556 0.61 +0.4

Or see this region's nucleotide sequence