Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_562

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8929 and 8930 are separated by 539 nucleotides8930 and 8931 are separated by 198 nucleotides mRNA_561: 8929 - Hypothetical Protein, at 1,341,305 to 1,346,099 8929 mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1,346,639 to 1,349,486 8930 mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1,349,685 to 1,350,957 8931

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,345,691 + +0.7
1,345,703 - -0.8
1,346,132 + +0.7
1,346,132 + +1.2
1,346,150 + +0.6
1,346,179 - +0.4
1,346,257 - +0.8
1,346,270 + -0.9
1,346,409 + +0.5
1,346,434 + +1.9
1,346,566 - -0.4
1,346,577 - -0.1
1,346,583 - -0.5
1,346,586 + +0.8
1,346,603 + +0.1
1,349,065 - 8930 mRNA_562 0.85 +0.1
1,349,337 - +0.8
1,349,618 - +0.8
1,349,623 - -0.2
1,349,628 - +0.4
1,349,642 - -0.9
1,349,658 + -0.7
1,350,225 - 8931 mRNA_563 0.42 -1.4

Or see this region's nucleotide sequence